If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ), 'gf_id' => 'HOM05D000952', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000952' ), 'data_identifier' => 'HOM05D000952', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000952', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '628', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p34920' => 'bna', 'A03p07150' => 'bna', 'A03p10220' => 'bna', 'A03p32730' => 'bna', 'A03p55670' => 'bna', 'A04p10830' => 'bna', 'A06p41580' => 'bna', 'A07p14800' => 'bna', 'A07p43150' => 'bna', 'A08p21320' => 'bna', 'A09p03210' => 'bna', 'A09p42710' => 'bna', 'Aa31LG11G14120' => 'aar', 'Aa31LG2G5610' => 'aar', 'Aa31LG3G7140' => 'aar', 'Aa31LG5G12570' => 'aar', 'Aa31LG7G10750' => 'aar', 'Aa31LG7G6040' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.3379' => 'aag', 'Actinidia01979' => 'ach', 'Actinidia07822' => 'ach', 'Actinidia10292' => 'ach', 'Actinidia19571' => 'ach', 'Actinidia30741' => 'ach', 'Actinidia37740' => 'ach', 'Ah.02g119700' => 'amhyb', 'Ah.03g148230' => 'amhyb', 'Ah.11g046420' => 'amhyb', 'AL1G35470' => 'aly', 'AL2G38150' => 'aly', 'AL3G11220' => 'aly', 'AL5G16000' => 'aly', 'AL6G26310' => 'aly', 'AL7G28180' => 'aly', 'Aqoxy3G01674' => 'aox', 'Aqoxy3G03568' => 'aox', 'Aqoxy5G00690' => 'aox', 'Aqoxy6G00527' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1DMU41' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BVWV3N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BWT45P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DX1GN9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RF3Z0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XJIX3Z' => 'arhy', 'AT1G22050' => 'ath', 'AT1G77870' => 'ath', 'AT3G01050' => 'ath', 'AT3G26980' => 'ath', 'AT4G24990' => 'ath', 'AT5G15460' => 'ath', 'ATR0064G020' => 'atr', 'ATR0564G118' => 'atr', 'ATR0582G052' => 'atr', 'Atru.chr13.1279' => 'acertr', 'Atru.chr5.1259' => 'acertr', 'Atru.chr6.1873' => 'acertr', 'Atru.chr6.2607' => 'acertr', 'Atru.chr8.399' => 'acertr', 'AUR62003410' => 'cqu', 'AUR62029556' => 'cqu', 'AUR62034820' => 'cqu', 'BcaB01g05053' => 'bca', 'BcaB01g05055' => 'bca', 'BcaB02g11135' => 'bca', 'BcaB03g12453' => 'bca', 'BcaB03g14238' => 'bca', 'BcaB03g15914' => 'bca', 'BcaB04g17646' => 'bca', 'BcaB04g19420' => 'bca', 'BcaB07g32224' => 'bca', 'BcaC01g04495' => 'bca', 'BcaC03g17409' => 'bca', 'BcaC05g26131' => 'bca', 'BcaC06g31030' => 'bca', 'BcaC06g32844' => 'bca', 'BcaC06g33871' => 'bca', 'BcaC06g34925' => 'bca', 'BcaC07g38172' => 'bca', 'BcaC09g47682' => 'bca', 'BcaC09g50825' => 'bca', 'BcaNung03987' => 'bca', 'BcaNung03990' => 'bca', 'BNapus_Darmor_BZH_scaffold_113p00120' => 'bna', 'BolC2t11428H' => 'bol', 'BolC3t13311H' => 'bol', 'BolC3t16246H' => 'bol', 'BolC4t27391H' => 'bol', 'BolC5t30806H' => 'bol', 'BolC6t40205H' => 'bol', 'BolC7t42706H' => 'bol', 'BolC7t44122H' => 'bol', 'BolC7t45881H' => 'bol', 'BolC9t53262H' => 'bol', 'BraA01t04633Z' => 'bra', 'BraA02t08499Z' => 'bra', 'BraA03t10037Z' => 'bra', 'BraA03t12442Z' => 'bra', 'BraA03t14634Z' => 'bra', 'BraA05t22415Z' => 'bra', 'BraA06t27083Z' => 'bra', 'BraA07t29222Z' => 'bra', 'BraA07t30389Z' => 'bra', 'BraA07t31837Z' => 'bra', 'BraA08t34082Z' => 'bra', 'BraA09t35959Z' => 'bra', 'BraA09t39747Z' => 'bra', 'C01p20280' => 'bna', 'C02p53600' => 'bna', 'C03p08140' => 'bna', 'C03p39830' => 'bna', 'C04p23750' => 'bna', 'C05p21080' => 'bna', 'C06p51840' => 'bna', 'C07p21760' => 'bna', 'C07p36080' => 'bna', 'C07p38350' => 'bna', 'C07p53910' => 'bna', 'C09p03410' => 'bna', 'CAN.G150.6' => 'can', 'CAN.G1525.1' => 'can', 'CAN.G206.204' => 'can', 'CAN.G473.128' => 'can', 'CAN.G535.12' => 'can', 'CANSAT25G1127' => 'cansat', 'CANSAT25G3116' => 'cansat', 'CANSAT64G0506' => 'cansat', 'CANSAT64G1272' => 'cansat', 'CANSAT80G0938' => 'cansat', 'CARHR022400' => 'chi', 'CARHR071360' => 'chi', 'CARHR076020' => 'chi', 'CARHR148150' => 'chi', 'CARHR197860' => 'chi', 'CARHR232380' => 'chi', 'Carub.0001s2159' => 'cru', 'Carub.0002s2477' => 'cru', 'Carub.0003s0113' => 'cru', 'Carub.0005s0516' => 'cru', 'Carub.0006s1362' => 'cru', 'Carub.0007s1604' => 'cru', 'Ca_06814_v3' => 'car', 'Ca_09118_v3' => 'car', 'Ca_30712_v3' => 'car', 'CBR_g805' => 'cbr', 'Cc00_g08020' => 'ccan', 'Cc00_g15880' => 'ccan', 'Cc01_g20360' => 'ccan', 'Cc07_g01020' => 'ccan', 'Cc07_g04070' => 'ccan', 'Cc10_g05920' => 'ccan', 'CDE04G2431' => 'cde', 'CDE05G1558' => 'cde', 'CDE05G1842' => 'cde', 'CDE07G2033' => 'cde', 'Cfa015932' => 'cfa', 'Cfa018747' => 'cfa', 'Ciclev10002874m.g' => 'ccl', 'Ciclev10013136m.g' => 'ccl', 'Ciclev10017208m.g' => 'ccl', 'Ciclev10023316m.g' => 'ccl', 'Ciclev10033094m.g' => 'ccl', 'CiPaw.03G005200' => 'cil', 'CiPaw.03G091000' => 'cil', 'CiPaw.05G231900' => 'cil', 'CiPaw.07G101600' => 'cil', 'CiPaw.08G099800' => 'cil', 'CiPaw.11G003600' => 'cil', 'CiPaw.12G003400' => 'cil', 'ClCG05G013820' => 'cla', 'ClCG06G018120' => 'cla', 'COL.COLO4_13301' => 'col', 'COL.COLO4_16496' => 'col', 'COL.COLO4_21386' => 'col', 'Cpa.g.sc14.152' => 'cpa', 'Cpa.g.sc4.150' => 'cpa', 'Cpa.g.sc70.115' => 'cpa', 'Cpa.g.sc9.177' => 'cpa', 'Cre06.g260400' => 'cre', 'CsaV3_1G000330' => 'csa', 'CsaV3_3G026820' => 'csa', 'CsaV3_5G038420' => 'csa', 'CSS0003642' => 'camsi', 'CSS0004070' => 'camsi', 'CSS0007543' => 'camsi', 'CSS0007868' => 'camsi', 'CSS0023935' => 'camsi', 'CSS0025497' => 'camsi', 'CSS0029291' => 'camsi', 'CSS0030721' => 'camsi', 'CSS0042367' => 'camsi', 'DCAR_000948' => 'dca', 'DCAR_011053' => 'dca', 'DCAR_018356' => 'dca', 'Dinv11481' => 'din', 'Dinv13056' => 'din', 'Dinv19740' => 'din', 'Dinv25639' => 'din', 'Dinv33005' => 'din', 'Dinv33314' => 'din', 'Dinv44731' => 'din', 'Duzib041G0647' => 'dzi', 'Duzib068G1212' => 'dzi', 'Duzib084G0844' => 'dzi', 'Duzib093G2025' => 'dzi', 'Duzib116G0236' => 'dzi', 'Duzib133G0203' => 'dzi', 'Duzib138G0286' => 'dzi', 'Duzib147G1518' => 'dzi', 'Duzib147G1631' => 'dzi', 'Duzib187G0364' => 'dzi', 'Duzib187G1265' => 'dzi', 'Duzib205G0141' => 'dzi', 'Duzib211G0024' => 'dzi', 'Duzib211G0037' => 'dzi', 'Duzib211G0261' => 'dzi', 'Duzib264G0498' => 'dzi', 'Duzib264G0770' => 'dzi', 'ECA232G0080' => 'eca', 'ECA238G1376' => 'eca', 'ECA238G4218' => 'eca', 'ECA246G2631' => 'eca', 'ECA246G5342' => 'eca', 'ECA247G1592' => 'eca', 'EL10Ac5g11354' => 'bvu', 'EL10Ac6g15448' => 'bvu', 'Eucgr.H00920' => 'egr', 'Eucgr.I01624' => 'egr', 'Eucgr.I01980' => 'egr', 'Eucgr.K02698' => 'egr', 'FAN02G2751' => 'fan', 'FAN02G4208' => 'fan', 'FAN04G0909' => 'fan', 'FAN04G1766' => 'fan', 'FAN05G2353' => 'fan', 'FAN05G4891' => 'fan', 'FAN05G5007' => 'fan', 'FAN08G0095' => 'fan', 'FAN08G3621' => 'fan', 'FAN09G0029' => 'fan', 'FAN09G3669' => 'fan', 'FAN13G2457' => 'fan', 'FAN13G2703' => 'fan', 'FAN14G0547' => 'fan', 'FAN14G4733' => 'fan', 'FAN15G0624' => 'fan', 'FAN18G3685' => 'fan', 'FAN20G1020' => 'fan', 'FAN24G0245' => 'fan', 'FvH4_2g24930' => 'fve', 'FvH4_5g08960' => 'fve', 'FvH4_5g38170' => 'fve', 'FvH4_6g47390' => 'fve', 'FvH4_6g53910' => 'fve', 'Glyma.03G210000' => 'gma', 'Glyma.05G202800' => 'gma', 'Glyma.08G010100' => 'gma', 'Glyma.08G242300' => 'gma', 'Glyma.13G058400' => 'gma', 'Glyma.16G052900' => 'gma', 'Glyma.18G264600' => 'gma', 'Glyma.19G028200' => 'gma', 'Glyma.19G096500' => 'gma', 'Glyma.19G207200' => 'gma', 'Gohir.A03G053880' => 'ghi', 'Gohir.A03G054000' => 'ghi', 'Gohir.A05G230100' => 'ghi', 'Gohir.A05G370800' => 'ghi', 'Gohir.A06G039300' => 'ghi', 'Gohir.A07G231700' => 'ghi', 'Gohir.A08G073000' => 'ghi', 'Gohir.A08G116600' => 'ghi', 'Gohir.A09G011100' => 'ghi', 'Gohir.A09G037900' => 'ghi', 'Gohir.A11G071700' => 'ghi', 'Gohir.A11G117200' => 'ghi', 'Gohir.A12G008900' => 'ghi', 'Gohir.A12G192000' => 'ghi', 'Gohir.D03G113000' => 'ghi', 'Gohir.D04G044800' => 'ghi', 'Gohir.D05G232400' => 'ghi', 'Gohir.D06G040300' => 'ghi', 'Gohir.D07G238900' => 'ghi', 'Gohir.D08G082400' => 'ghi', 'Gohir.D08G137400' => 'ghi', 'Gohir.D09G010100' => 'ghi', 'Gohir.D09G038900' => 'ghi', 'Gohir.D11G075700' => 'ghi', 'Gohir.D11G122300' => 'ghi', 'Gohir.D12G008600' => 'ghi', 'Gohir.D12G194200' => 'ghi', 'Gorai.003G119200' => 'gra', 'Gorai.004G086300' => 'gra', 'Gorai.004G140700' => 'gra', 'Gorai.006G011700' => 'gra', 'Gorai.006G044400' => 'gra', 'Gorai.007G081400' => 'gra', 'Gorai.007G131000' => 'gra', 'Gorai.008G008500' => 'gra', 'Gorai.008G208900' => 'gra', 'Gorai.009G240600' => 'gra', 'Gorai.010G042900' => 'gra', 'Gorai.010G045000' => 'gra', 'Gorai.012G050000' => 'gra', 'GSVIVG01008590001' => 'vvi', 'GSVIVG01008972001' => 'vvi', 'GSVIVG01010987001' => 'vvi', 'GSVIVG01011498001' => 'vvi', 'GSVIVG01033043001' => 'vvi', 'HanXRQChr02g0043771' => 'han', 'HanXRQChr04g0101971' => 'han', 'HanXRQChr05g0162241' => 'han', 'HanXRQChr07g0198121' => 'han', 'HanXRQChr07g0199441' => 'han', 'HanXRQChr09g0264161' => 'han', 'HanXRQChr10g0278521' => 'han', 'HanXRQChr10g0283861' => 'han', 'HanXRQChr14g0448731' => 'han', 'HanXRQChr14g0451241' => 'han', 'HanXRQChr15g0465891' => 'han', 'HanXRQChr15g0488731' => 'han', 'HanXRQChr17g0546701' => 'han', 'HanXRQChr17g0551641' => 'han', 'Haze_00558' => 'cav', 'Haze_07187' => 'cav', 'Haze_14466' => 'cav', 'Haze_14908' => 'cav', 'Hma1.2p1_0029F.1_g018150' => 'hma', 'Hma1.2p1_0276F.1_g111420' => 'hma', 'Hma1.2p1_0525F.1_g172610' => 'hma', 'Hma1.2p1_0529F.1_g173200' => 'hma', 'Hma1.2p1_1813F.1_g303730' => 'hma', 'Hma1.2p1_2760F.1_g328086' => 'hma', 'HPP92_001928' => 'vpl', 'HPP92_002337' => 'vpl', 'HPP92_011764' => 'vpl', 'HPP92_011768' => 'vpl', 'HPP92_020438' => 'vpl', 'HPP92_027476' => 'vpl', 'Hund02469' => 'sun', 'Hund02470' => 'sun', 'Lalb_Chr02g0159011' => 'lal', 'Lalb_Chr06g0175071' => 'lal', 'Lalb_Chr07g0183591' => 'lal', 'Lalb_Chr12g0202341' => 'lal', 'Lalb_Chr12g0202351' => 'lal', 'Lalb_Chr13g0297151' => 'lal', 'Lalb_Chr15g0078721' => 'lal', 'Lalb_Chr21g0318451' => 'lal', 'Lj1g0013509' => 'lja', 'Lj1g0014109' => 'lja', 'Lj1g0019088' => 'lja', 'Lj1g0019163' => 'lja', 'Lj2g0006447' => 'lja', 'Lj4A116T83' => 'lonja', 'Lj4g0016609' => 'lja', 'Lj7A612G84' => 'lonja', 'LjContig00470g0026818' => 'lja', 'Lsat_1_v5_gn_0_3401' => 'lsa', 'Lsat_1_v5_gn_1_4081' => 'lsa', 'Lsat_1_v5_gn_2_87840' => 'lsa', 'Lsat_1_v5_gn_2_94381' => 'lsa', 'Lsat_1_v5_gn_3_98860' => 'lsa', 'Lsat_1_v5_gn_6_102081' => 'lsa', 'Lsat_1_v5_gn_9_2400' => 'lsa', 'Lsat_1_v5_gn_9_43381' => 'lsa', 'Manes.01G098500' => 'mes', 'Manes.01G214600' => 'mes', 'Manes.02G051701' => 'mes', 'Manes.02G156900' => 'mes', 'Manes.05G067200' => 'mes', 'Manes.06G122900' => 'mes', 'Manes.11G083600' => 'mes', 'Manes.14G048000' => 'mes', 'Manes.18G070933' => 'mes', 'Mapoly0070s0081' => 'mpo', 'MBI02_g19397_MAGBIO' => 'mbi', 'MBI02_g37829_MAGBIO' => 'mbi', 'MBI05_g36569_MAGBIO' => 'mbi', 'MBI07_g27402_MAGBIO' => 'mbi', 'MCO06G026' => 'mco', 'MD03G1093600' => 'mdo', 'MD03G1233500' => 'mdo', 'MD03G1277800' => 'mdo', 'MD05G1299800' => 'mdo', 'MD06G1136800' => 'mdo', 'MD06G1168300' => 'mdo', 'MD08G1176300' => 'mdo', 'MD09G1007300' => 'mdo', 'MD09G1061800' => 'mdo', 'MD11G1299700' => 'mdo', 'MD14G1151600' => 'mdo', 'MD15G1362100' => 'mdo', 'MD17G1011200' => 'mdo', 'Medtr6g013820' => 'mtr', 'Medtr7g012560' => 'mtr', 'Medtr7g027017' => 'mtr', 'Medtr7g027300' => 'mtr', 'Medtr7g108180' => 'mtr', 'Medtr8g096380' => 'mtr', 'Medtr8g096390' => 'mtr', 'MELO3C014908.2' => 'cme', 'MELO3C022023.2' => 'cme', 'MELO3C026186.2' => 'cme', 'Migut.C00197' => 'egut', 'Migut.D00171' => 'egut', 'Migut.F00039' => 'egut', 'Migut.H00648' => 'egut', 'Migut.K01290' => 'egut', 'Migut.N02918' => 'egut', 'MSTRG.21602' => 'ama', 'MSTRG.22132' => 'ama', 'MSTRG.23900' => 'ama', 'MSTRG.24108' => 'ama', 'MSTRG.24479' => 'ama', 'MSTRG.24947' => 'ama', 'MSTRG.3017' => 'ama', 'MSTRG.3059' => 'ama', 'MSTRG.3347' => 'ama', 'MSTRG.955' => 'ama', 'Nitab4.5_0000425g0030' => 'nta', 'Nitab4.5_0000519g0080' => 'nta', 'Nitab4.5_0000565g0190' => 'nta', 'Nitab4.5_0002534g0020' => 'nta', 'Nitab4.5_0004450g0010' => 'nta', 'Nitab4.5_0004872g0010' => 'nta', 'Nitab4.5_0005858g0060' => 'nta', 'Nitab4.5_0008213g0090' => 'nta', 'Nitab4.5_0010340g0010' => 'nta', 'Nitab4.5_0011381g0020' => 'nta', 'Nn1g05250' => 'nnu', 'Nn3g16364' => 'nnu', 'Nn3g17383' => 'nnu', 'Nn3g21343' => 'nnu', 'Nn4g22226' => 'nnu', 'Nn4g23358' => 'nnu', 'Nn4g25975' => 'nnu', 'Nn5g28983' => 'nnu', 'Oeu008498.2' => 'oeu', 'Oeu010237.1' => 'oeu', 'Oeu022288.5' => 'oeu', 'Oeu033386.1' => 'oeu', 'Oeu035353.1' => 'oeu', 'Oeu048931.1' => 'oeu', 'Oeu061472.2' => 'oeu', 'Oeu062147.1' => 'oeu', 'Os02g0750600' => 'osa', 'Os03g0426800' => 'osa', 'Os04g0393300' => 'osa', 'Os06g0224100' => 'osa', 'Os12g0141900' => 'osa', 'Peaxi162Scf00166g00636' => 'pax', 'Peaxi162Scf00168g00518' => 'pax', 'Peaxi162Scf00420g00654' => 'pax', 'PGR004G1915' => 'pgr', 'PGR042G3938' => 'pgr', 'PGR044G1195' => 'pgr', 'PGR083G2739' => 'pgr', 'PGR142G3320' => 'pgr', 'PGSC0003DMG400001443' => 'stu', 'PGSC0003DMG400008547' => 'stu', 'PGSC0003DMG400009422' => 'stu', 'PGSC0003DMG400020203' => 'stu', 'PGSC0003DMG400027534' => 'stu', 'Phvul.001G090400' => 'pvu', 'Phvul.001G203100' => 'pvu', 'Phvul.002G284000' => 'pvu', 'Phvul.004G034100' => 'pvu', 'Phvul.008G035500' => 'pvu', 'Potri.001G325900' => 'ptr', 'Potri.002G091800' => 'ptr', 'Potri.004G124600' => 'ptr', 'Potri.012G103100' => 'ptr', 'Potri.015G101200' => 'ptr', 'Potri.017G068100' => 'ptr', 'Potri.017G090700' => 'ptr', 'Pp3c16_17370' => 'ppa', 'Pp3c5_20870' => 'ppa', 'Pp3c6_11400' => 'ppa', 'PRCOL_00004490' => 'pco', 'Prupe.1G510100' => 'ppe', 'Prupe.3G258300' => 'ppe', 'Prupe.3G309700' => 'ppe', 'Prupe.5G146700' => 'ppe', 'Prupe.8G254100' => 'ppe', 'Psat1g070120' => 'psa', 'Psat3g024320' => 'psa', 'Psat3g167680' => 'psa', 'Psat3g200680' => 'psa', 'Psat7g037360' => 'psa', 'PSO017G1125' => 'pso', 'PSO017G1647' => 'pso', 'PSO017G5220' => 'pso', 'PSO210G0117' => 'pso', 'PSO409G0014' => 'pso', 'PSO478G0426' => 'pso', 'PSO478G3460' => 'pso', 'PSO478G4169' => 'pso', 'PSO541G2597' => 'pso', 'PSO675G7821' => 'pso', 'PSO832G0742' => 'pso', 'QL02p039545' => 'qlo', 'QL02p070694' => 'qlo', 'QL10p001851' => 'qlo', 'QL12p024360' => 'qlo', 'QL12p035704' => 'qlo', 'RcHm_v2.0_Chr2g0166451' => 'rch', 'RcHm_v2.0_Chr2g0176071' => 'rch', 'RcHm_v2.0_Chr6g0292851' => 'rch', 'RcHm_v2.0_Chr7g0189361' => 'rch', 'RcHm_v2.0_Chr7g0189411' => 'rch', 'RcHm_v2.0_Chr7g0240171' => 'rch', 'Rhsim01G0280600' => 'rsi', 'Rhsim06G0086500' => 'rsi', 'Rhsim08G0041300' => 'rsi', 'Rhsim10G0004100' => 'rsi', 'Rhsim10G0045000' => 'rsi', 'Sabra04G0089800' => 'sbr', 'Sabra12G0075500' => 'sbr', 'Sabra16G0208400' => 'sbr', 'Sabra17G0079900' => 'sbr', 'SalBow1G4453' => 'sbo', 'SalBow1G5594' => 'sbo', 'SalBow1G8554' => 'sbo', 'SalBow3G3186' => 'sbo', 'SalBow4G2681' => 'sbo', 'SalBow6G2405' => 'sbo', 'SalBow6G5292' => 'sbo', 'SalBow7G3316' => 'sbo', 'Sc04g0000420' => 'sci', 'Sc10g0003250' => 'sci', 'Sc22g0003630' => 'sci', 'Sed0000337' => 'sed', 'Sed0001496' => 'sed', 'Sed0021351' => 'sed', 'Sed0023775' => 'sed', 'Sed0024725' => 'sed', 'SEGI_00358' => 'sgi', 'SEGI_27790' => 'sgi', 'SEGI_29610' => 'sgi', 'SGA_v2.0_scaffold172G39068' => 'sas', 'SGA_v2.0_scaffold36G14357' => 'sas', 'SMO119G0451' => 'smo', 'Solyc02g068230.3' => 'sly', 'Solyc02g088620.3' => 'sly', 'Solyc02g094350.3' => 'sly', 'Solyc04g072640.3' => 'sly', 'Solyc12g056900.2' => 'sly', 'Sopen02g017330' => 'spe', 'Sopen02g033350' => 'spe', 'Sopen02g039000' => 'spe', 'Sopen04g028840' => 'spe', 'Sopen12g029550' => 'spe', 'Sp2g16100' => 'spa', 'Sp3g01090' => 'spa', 'Sp5g33040' => 'spa', 'Sp6g28640' => 'spa', 'Sp7g22980' => 'spa', 'TAR355G0003' => 'tar', 'TAR362G0853' => 'tar', 'TAR371G0494' => 'tar', 'TAR374G0781' => 'tar', 'TAR374G1429' => 'tar', 'TAR381G0185' => 'tar', 'TAR622G0495' => 'tar', 'TAR622G0529' => 'tar', 'TAR625G0509' => 'tar', 'TAR629G3460' => 'tar', 'TAR633G1024' => 'tar', 'THA.LOC104800172' => 'tha', 'THA.LOC104802963' => 'tha', 'THA.LOC104803151' => 'tha', 'THA.LOC104811570' => 'tha', 'THA.LOC104821009' => 'tha', 'THA.LOC104822341' => 'tha', 'THA.LOC104825636' => 'tha', 'Thecc.01G292300' => 'tca', 'Thecc.03G135200' => 'tca', 'Thecc.03G135400' => 'tca', 'Thecc.04G091500' => 'tca', 'Thecc.08G113600' => 'tca', 'Thhalv10005144m.g' => 'esa', 'Thhalv10009136m.g' => 'esa', 'Thhalv10015016m.g' => 'esa', 'Thhalv10019328m.g' => 'esa', 'Thhalv10021787m.g' => 'esa', 'Thhalv10026428m.g' => 'esa', 'TPR.G12857' => 'tpr', 'TPR.G26196' => 'tpr', 'TPR.G32285' => 'tpr', 'TPR.G33425' => 'tpr', 'TPR.G8550' => 'tpr', 'TWI12G0363' => 'twi', 'TWI14G0590' => 'twi', 'TWI14G0924' => 'twi', 'TWI23G0678' => 'twi', 'TWI32G1209' => 'twi', 'TWI34G0029' => 'twi', 'TWI34G0048' => 'twi', 'TWI34G0263' => 'twi', 'TWI39G0753' => 'twi', 'TWI59G1024' => 'twi', 'TWI60G0481' => 'twi', 'TWI60G0658' => 'twi', 'unitig_26.g9874' => 'ugi', 'unitig_32.g11171' => 'ugi', 'unitig_32.g11774' => 'ugi', 'unitig_578.g16209' => 'ugi', 'unitig_748.g7737' => 'ugi', 'unitig_749.g13888' => 'ugi', 'vmacro05660' => 'vma', 'vmacro05979' => 'vma', 'vmacro14971' => 'vma', 'vmacro18362' => 'vma', 'vmacro21222' => 'vma', 'VMungo0251G0165' => 'vmu', 'VMungo0251G1861' => 'vmu', 'VMungo0464G0296' => 'vmu', 'VMungo0464G1784' => 'vmu', 'VMungo0464G1926' => 'vmu', 'VMungo1383G1109' => 'vmu', 'VMungo1383G1976' => 'vmu', 'VMungo1383G2157' => 'vmu', 'Zm00001eb020320' => 'zma', 'Zm00001eb085200' => 'zma', 'Zm00001eb194330' => 'zma', 'Zm00001eb372550' => 'zma', 'Zm00001eb393240' => 'zma', 'Zm00001eb421240' => 'zma' ) $gf_id = 'HOM05D000952' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000952' ) $data_identifier = 'HOM05D000952' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 25, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 3, 'aly' => (int) 6, 'aox' => (int) 4, 'arhy' => (int) 6, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 21, 'bol' => (int) 10, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 6, 'cde' => (int) 4, 'cfa' => (int) 2, 'ccl' => (int) 5, 'cil' => (int) 7, 'cla' => (int) 2, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 3, 'camsi' => (int) 9, 'dca' => (int) 3, 'din' => (int) 7, 'dzi' => (int) 17, 'eca' => (int) 6, 'bvu' => (int) 2, 'egr' => (int) 4, 'fan' => (int) 19, 'fve' => (int) 5, 'gma' => (int) 10, 'ghi' => (int) 27, 'gra' => (int) 13, 'vvi' => (int) 5, 'han' => (int) 14, 'cav' => (int) 4, 'hma' => (int) 6, 'vpl' => (int) 6, 'sun' => (int) 2, 'lal' => (int) 8, 'lja' => (int) 7, 'lonja' => (int) 2, 'lsa' => (int) 8, 'mes' => (int) 9, 'mpo' => (int) 1, 'mbi' => (int) 4, 'mco' => (int) 1, 'mdo' => (int) 13, 'mtr' => (int) 7, 'cme' => (int) 3, 'egut' => (int) 6, 'ama' => (int) 10, 'nta' => (int) 10, 'nnu' => (int) 8, 'oeu' => (int) 8, 'osa' => (int) 5, 'pax' => (int) 3, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 5, 'ptr' => (int) 7, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 5, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 8, 'sci' => (int) 3, 'sed' => (int) 5, 'sgi' => (int) 3, 'sas' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 11, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 5, 'twi' => (int) 12, 'ugi' => (int) 6, 'vma' => (int) 5, 'vmu' => (int) 8, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421240' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1